Publication

After 2014

Cho B, Shin M, Chang E, Son S, Shin I, and Shim J (2024) S-nitrosylation-triggered unfolded protein response maintains hematopoietic progenitors in Drosophila, Developmental Cell, in press

Yoon SH, Cho B, Lee D, Kim H, Shim J* and JW Nam* (2023) Molecular traces of Drosophila hemocytes reveal transcriptomic conservation with vertebrate myeloid cells, PLOS Genetics, doi:10.1371/journal.pgen.1011077

Yoon S*, Shin M*, and Shim J (2022) Inter-organ regulation by the brain in Drosophila development and physiology, Journal of Neurogenetics, doi: 10.1080/01677063.2022.2138162

Shin M and Shim J (2022) Alternative splicing: A new role for Hif-1a, eLife, doi:10/7544/eLife.82028

Koranteng F*, Cho B*, and Shim J (2022) Intrinsic and extrinsic regulation of hematopoiesis in Drosophila, Molecules and Cells, 45(3) 101-108

Li H, Janssens J, De Waegeneer M, Kolluru SS, Davie K, Gardeux V, Sealens W, David F, Brbic M, Leskovec J, McLaughlin C, Xie Q, Jones R, Brueckner K, Shim J, Tattikota SG, Schnorrer F, Rust K, Nystul T, Carvalho-Santos Z, Ribeiro C, Pal S, Przytycka TM, Allen A, Goodwin S, Berry CW, Fuller MT, White-Cooper H, Matunis E, DiNardo S, Galenza A, O'Brien LE, Dow JAT, Jasper H, Oliver B, Perrimon N, Deplancke B, Quake S, Luo L, Aerts S, FCA Consortium (2022) Fly Cell Atlas: a single-nucleus transcriptomic atlas of the adult fruit fly, Science, 275(6584) eabk2432 (BioRxiv doi:10.1101/2021.07.04.451050)

Nguyen TTN, Shim J, and Song YH (2021) Chk2-p53 and JNK in irradiation-induced cell death of hematopoietic progenitors and differentiated cells in Drosophila larval lymp gland, Biol Open, Jul 30; bio.058809 

Madhwal S, Shin M, Joshi M, Kapoor A, Rehman P MR, Gor K, Shim J* and Mukherjee T* (2020) Metabolic control of immune-competency by odors in Drosophila, eLife, doi:10.7554/eLife.60376

Cho B*, Yoon SH*, Lee D, Koranteng F, Tattikota SG, Cha N, Shin M, Do H, Hu Y, Oh SY, Moon SJ, Perrimon N, Nam JW* and Shim J* (2020) Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila, Nature Communications, 11(1), 4483

Tattikota SG, Cho B, Hu Y, Liu Y, Barrera V, Steinbaugh M, Yoon SH, Comjean A, Li F, Dervis F, Hung RJ, Nam JW, Sui SH, Shim J and Perrimon N (2020) A single-cell survey of Drosophila blood, eLife, 9, e54818

Koranteng F*, Cha N*, Shin M* and Shim J (2020) The role of Lozenge in Drosophila hematopoiesis. Molecules and Cells, 43(2), 114-120

Shin M*, Cha N*, Koranteng F*, Cho B and Shim J (2020) Subpopulation of macrophage-like plasmatocytes attenuates systemic growth via JAK/STAT in the Drosophila fat body, Frontiers in Immunology, 11:63

Cho B, Spratford CM, Yoon S, Cha N, Banerjee U* and Shim J* (2018) Systemic control of immune cell development by integrated hypoxia chemosensation in Drosophila, Nature Communications, 9(1):2679

Yoon S, Cho B, Shin M, Koranteng F, Cha N and Shim J (2017) Iron homeostasis controls myeloid blood cell differentiation in Drosophila, Molecules and Cells, 40(12): 976-985

Kim S, Nahm M, Kim N, Kwon Y, Kim J, Choi S, Choi EY, Shim J, Lee C and Lee S (2017) Graf regulates hematopoiesis through GEEC endocytosis of EGFR. Development, doi:10.1242/dev.153288

Shim J* and Nam J.W.* (2016) The expression and functional roles of microRNAs in stem cell differentiation. BMB reports, 49(1): 3-10

Shim J (2015) Drosophila blood as a model system for stress sensing mechanism. BMB reports, 48(4): 223-228

Mondal BC, Shim J, Evans CJ and Banerjee U (2014) Pvr expression regulators in equilibrium signal control and maintenance of Drosophila blood progenitors. eLife, 3: e03626

Before 2014

Shim J*, Mukherjee T*, Mondal BC, Liu T, Young G, Wijewarnasuriya D and Banerjee U (2013) Olfactory control of blood progenitor maintenance. Cell, 155(5): 1141-1153 (*co-first authors)

Shim J, Rao SG and Banerjee U (2013) Systemic nutritional regulation of stem and progenitor cells in Drosophila. Development, 140: 4647-4656

Lee K*, Shim J*, Lee J* and Lee J (2013) Identification of genes interacting with rnt1 by genome-wide RNAi screening in Caenorhabditis elegans. G3: Genes, Genomes, Genetics, 3(10): 1779-1784 (*co-first authors)

Lee K*, Shim J*, Bae J, Kim Y and Lee J (2012) Stabilization of RNT-1, the RUNX homolog of Caenorhabditis elegans, by oxidative stress through MAP kinase pathway. J. Biol. Chem., 287(13): 10444-52 (*co-first authors)

Shim J, Mukherjee T and Banerjee U (2012) Direct sensing of systemic and nutritional signals by hematopoietic progenitors in Drosophila. Nat. Cell. Biol., 14(4): 394-400

Sinenko S.A*, Shim J* and Banerjee U (2012) Oxidative stress in the haematopoietic niche regulates the cellular immune response in Drosophila. EMBO Reports, 13(1): 83-9 (*co-first authors)

Jo H*, Shim J*, Lee JH, Kim J# and Lee J# (2009) IRE-1 and HSP-4 contribute to energy homeostasis via fasting-induced lipases in C.elegans. Cell metabolism, 9(5): 440-8 (*co-first authors)

Shim J and Lee J (2008) Regulation of rnt1 mediated by the opposing effects of BRO-1 and DBL-1 in the nematode Caenorhabditis elegans. Biochem Biophys Res Commun. 367(1): 130-6

 Lee J, Nam S, Hwang SB, Hong M, Kwon JY, Joeng KS, Im SH, Shim J and Park MC (2004) Functional genomic approaches using the nematode Caenorhabditis elegans as a model system. J Biochem Mol Biol., 37(1): 107-13